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The pH of secretory and endocytic compartments is known to be uniquely acidic in each compartment and crucial for their efficient functioning in mammalian cells (Kim et al. 1996; Demaurex et al. 1998; Palokangas et al. 1998; Schapiro and Grinstein 2000; Wu et al. 2001; Paroutis et al. 2004, for a recent review, see also Kellokumpu 2019). In general, the acidity of the secretory compartments increases toward the plasma membrane, while the pH of endosomal compartments increases toward the cell center (late endosomes and lysosomes). Among all these compartments, the Golgi apparatus is the most enigmatic one, as it represents a converging point between the two pathways, receiving vesicular carriers from the endoplasmic reticulum (neutral) and the endosomal compartments (acidic) and sending them back to these destinations as part of its sorting functions. Moreover, Golgi resting pH decreases from the cis-Golgi cisternae (pH 6.7) to medial (pH 6.5) and trans-Golgi cisternae (pH 6.3) reaching pH 6.0 at the TGN. How this pH gradient along the cis-trans axis of Golgi cisternae is established is not completely clear, but it may involve two different mechanisms, which be need not be mutually exclusive: the first one may involve selective trafficking of vesicular carriers between the cis-Golgi and the neutral ER and between the trans-Golgi and the acidic endosomal compartments. The other one is the number of proton pumps or proton leak “channels” that may change along the cis-trans axis of the Golgi stack (Wu et al. 2001; Paroutis et al. 2004).
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